Co-expression analysis

Gene ID	Contig15156_at
Gene name
Homology with Arabidopsis	Similar to At1g48210: serine/threonine protein kinase, putative (HF=2e+0)
Module size	6 genes
NF	0.62
%ile	84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.97	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig125_at	Contig125	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig14753_at	Contig14753	-	-	4e-7	At5g38060	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig8742_at	Contig8742	-	-	1e-6	At3g61600	ATPOB1	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig9136_at	Contig9136	-	-	1e-5	At3g51140	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.1	97.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.8	97.0	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.6	96.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.5	95.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the maize gene, Zm.11672.1.A1_at, orthologous to the query gene, Contig15156_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.11672.1.A1_at	At1g48210	-	-	5e+0	At5g36910	THI2.2 (THIONIN 2.2)	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.17781.1.A1_at	At1g48210	-	-	1e+1	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.94.1.S1_at	At1g48210	Dof2	-	1e-7	At2g28810	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.5074.1.A1_at	At1g48210	-	-	5e-14	At3g62600	ATERDJ3B	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.16475.3.A1_at	At1g48210	-	-	2e-7	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.4833.1.A1_at	At1g48210	hypothetical protein LOC100272303	-	2e-12	At5g57815	cytochrome c oxidase subunit 6b, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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