Co-expression analysis

Gene ID	Contig15156_at
Gene name
Homology with Arabidopsis	Similar to At1g48210: serine/threonine protein kinase, putative (HF=2e+0)
Module size	6 genes
NF	0.62
%ile	84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.97	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig125_at	Contig125	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig14753_at	Contig14753	-	-	4e-7	At5g38060	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig8742_at	Contig8742	-	-	1e-6	At3g61600	ATPOB1	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig9136_at	Contig9136	-	-	1e-5	At3g51140	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.1	97.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.8	97.0	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.6	96.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.5	95.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the grape gene, 1616189_at, orthologous to the query gene, Contig15156_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	1616189_at	At1g48210	hypothetical protein LOC100260741	-	6e-18	At1g75820	CLV1 (CLAVATA 1)	O.I.	H.G.	S.X.	Please select
0.48	68.8	1612831_s_at	At1g48210	H+-pyrophosphatase	-	5e-9	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.39	54.9	1622167_at	At1g48210	hypothetical protein LOC100249144	-	9e-5	At5g23410	-	O.I.	H.G.	S.X.	Please select
0.39	54.9	1615292_at	At1g48210	similar to oligopeptidase A	-	1e-37	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1616540_at	At1g48210	hypothetical protein LOC100244175	-	3e-14	At1g71865	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1622775_at	At1g48210	hypothetical protein LOC100241371	-	3e-7	At4g00570	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	1612742_s_at	At1g48210	hypothetical protein LOC100260825	-	4e-3	At1g51600	TIFY2A	O.I.	H.G.	S.X.	Please select
0.29	37.7	1609313_at	At1g48210	similar to 2-oxo acid dehydrogenase, lipoyl-binding site	-	6e-2	At4g22320	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1618498_at	At1g48210	hypothetical protein LOC100255416	-	7e-6	At5g01980	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1611783_at	At1g48210	hypothetical protein LOC100262520	-	1e+0	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	1616447_at	At1g48210	hypothetical protein LOC100242721	-	5e+0	At5g25210	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1609604_at	At1g48210	hypothetical protein LOC100264326	-	2e-3	At1g34780	ATAPRL4 (APR-like 4)	O.I.	H.G.	S.X.	Please select
0.23	27.5	1619413_at	At1g48210	-	-	7e-6	At1g64850	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1606924_a_at	At1g48210	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	8e-86	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.21	24.0	1621021_at	At1g48210	hypothetical protein LOC100249161	-	2e-1	At5g56610	dual specificity protein phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1621964_at	At1g48210	hypothetical protein LOC100259817	-	2e-1	At3g44950	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1612995_at	At1g48210	-	-	4e-18	At3g13340	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1619524_at	At1g48210	-	-	6e-2	At5g13240	transcription regulator	O.I.	H.G.	S.X.	Please select
0.14	14.4	1621040_at	At1g48210	hypothetical protein LOC100252271	-	1e-1	At1g31750	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	1612817_at	At1g48210	hypothetical protein LOC100267132	-	3e-1	At3g62330	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1615154_at	At1g48210	hypothetical protein LOC100251043	-	8e-6	At3g09085	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1622461_at	At1g48210	hypothetical protein LOC100265048	-	3e-28	At5g53570	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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