Co-expression analysis

Gene ID	Contig15156_at
Gene name
Homology with Arabidopsis	Similar to At1g48210: serine/threonine protein kinase, putative (HF=2e+0)
Module size	6 genes
NF	0.62
%ile	84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.97	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig125_at	Contig125	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig14753_at	Contig14753	-	-	4e-7	At5g38060	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig8742_at	Contig8742	-	-	1e-6	At3g61600	ATPOB1	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig9136_at	Contig9136	-	-	1e-5	At3g51140	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.1	97.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.8	97.0	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.6	96.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.5	95.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.5261.1.A1_at, orthologous to the query gene, Contig15156_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.9	PtpAffx.5261.1.A1_at	At1g48210	hypothetical protein	-	1e+0	At3g52390	tatD-related deoxyribonuclease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.7926.1.S1_at	At1g48210	-	-	1e-73	Atmg00080	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.16440.1.A1_s_at	At1g48210	hypothetical protein	-	1e+0	At2g07721	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.146792.1.A1_at	At1g48210	hypothetical protein	-	2e-3	At3g43180	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.4666.1.S1_s_at	At1g48210	hypothetical protein	-	4e-38	At4g26640	WRKY20	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.2877.1.S1_at	At1g48210	hypothetical protein	-	4e-31	At3g15880	protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	Ptp.7856.1.S1_at	At1g48210	hypothetical protein	-	1e-12	At2g24590	splicing factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.143059.1.A1_at	At1g48210	-	-	5e-1	At3g02200	proteasome family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.20456.1.S1_at	At1g48210	hypothetical protein	-	3e-71	At2g17630	phosphoserine aminotransferase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.2005.1.S1_at	At1g48210	hypothetical protein	-	3e-52	At5g10360	EMB3010 (embryo defective 3010)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.65303.2.S1_s_at	At1g48210	hypothetical protein	-	1e-6	At2g41430	ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.152314.1.A1_at	At1g48210	hypothetical protein	-	9e-14	At5g62820	integral membrane protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.40080.1.S1_s_at	At1g48210	hypothetical protein	-	2e-40	At4g26640	WRKY20	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.10525.1.S1_at	At1g48210	jumonji domain protein /// jumonji domain protein	-	1e-23	At1g08620	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	Ptp.7444.1.S1_s_at	At1g48210	hypothetical protein	-	7e-43	At1g10210	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.33729.1.A1_at	At1g48210	f-box family protein	-	2e+0	At1g36095	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.92337.1.S1_at	At1g48210	hypothetical protein	-	2e-36	At3g47120	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.99774.1.S1_at	At1g48210	hypothetical protein	-	2e+0	At5g19850	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.71377.1.S1_at	At1g48210	hypothetical protein	-	6e-6	At3g55350	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.8668.1.S1_s_at	At1g48210	hypothetical protein	-	4e-22	At2g29700	ATPH1 (ARABIDOPSIS THALIANA PLECKSTRIN HOMOLOGUE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.113579.2.S1_at	At1g48210	hypothetical protein	-	2e-19	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.1197.1.S1_at	At1g48210	hypothetical protein	-	2e-9	At5g04550	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	Ptp.3262.1.S1_at	At1g48210	hypothetical protein	-	2e-16	At4g24880	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.22608.1.A1_at	At1g48210	hypothetical protein	-	7e-32	At1g67800	copine-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.52508.1.S1_x_at	At1g48210	hypothetical protein	-	1e-98	At1g79550	PGK (PHOSPHOGLYCERATE KINASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.12733.1.S1_at	At1g48210	hypothetical protein	-	4e+0	At4g33465	SCRL22 (SCR-Like 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.12226.2.S1_at	At1g48210	hypothetical protein	-	4e-12	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.2772.2.S1_at	At1g48210	hypothetical protein	-	1e-29	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.2343.1.A1_at	At1g48210	-	-	4e-14	At3g13700	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	Ptp.2801.1.A1_at	At1g48210	hypothetical protein	-	2e-105	At1g11890	SEC22	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.22453.1.S1_at	At1g48210	hypothetical protein	-	6e-72	At5g14530	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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