Co-expression analysis

Gene ID	Contig15152_at
Gene name
Homology with Arabidopsis	Similar to At3g11820: SYP121 (SYNTAXIN OF PLANTS 121) (HF=3e-1)
Module size	13 genes
NF	0.38
%ile	52.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.81	Contig15152_at	Contig15152	-	-	3e-1	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.83	HV10L10u_at	HV10L10u	-	-	3e+0	At2g05520	GRP-3 (GLYCINE-RICH PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.88	Contig20150_at	Contig20150	-	-	1e-5	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.82	Contig3163_at	Contig3163	-	-	7e-1	At3g52540	OFP18 (OVATE FAMILY PROTEIN 18)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.90	Contig5149_at	Contig5149	-	-	4e-2	At1g66670	CLPP3	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.87	EBro08_SQ007_K09_at	EBro08_SQ007_K09	-	-	2e-2	At1g55080	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.88	Contig5806_at	Contig5806	-	-	4e+0	At3g03880	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.88	Contig11168_at	Contig11168	-	-	1e-15	At5g12480	CPK7 (calmodulin-domain protein kinase 7)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.88	Contig1630_at	Contig1630	-	-	5e-1	At1g69180	CRC (CRABS CLAW)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.88	Contig5339_s_at	Contig5339	-	-	3e-2	At2g16015	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.85	Contig6764_at	Contig6764	-	-	1e-6	At5g26710	glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.85	HS05N06r_s_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.91	Contig11041_at	Contig11041	-	-	1e+0	At3g08940	LHCB4.2 (light harvesting complex PSII)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.9	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
7.4	98.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.7	97.7	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.5	96.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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