Co-expression analysis

Gene ID	Contig15062_at
Gene name
Homology with Arabidopsis	Similar to At4g25440: ZFWD1 (zinc finger WD40 repeat protein 1) (HF=1e-1)
Module size	26 genes
NF	0.37
%ile	50.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.8	0.95	Contig15062_at	Contig15062	-	-	1e-1	At4g25440	ZFWD1 (zinc finger WD40 repeat protein 1)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	Contig4193_at	Contig4193	-	-	1e-5	At5g58970	ATUCP2 (UNCOUPLING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.96	Contig333_3_x_at	Contig333_3	-	-			-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig12252_at	Contig12252	-	-	6e-1	At3g46770	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.95	Contig2585_s_at	Contig2585	-	-	5e-3	At5g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig4337_at	Contig4337	-	-	5e-5	At1g14540	anionic peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig3707_at	Contig3707	-	-	1e-23	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.96	HV_CEb0003J15r2_at	HV_CEb0003J15r2	-	-	3e+0	At4g08878	inorganic phosphate transporter, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig336_at	Contig336	-	-	4e-1	At5g66580	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig3470_at	Contig3470	-	-	1e-11	At2g37340	RSZ33	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig576_s_at	Contig576	-	-	2e-21	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	Contig5081_at	Contig5081	-	-	5e-7	At2g42910	ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig19935_at	Contig19935	-	-	2e-6	At3g58000	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	Contig4873_s_at	Contig4873	-	-	4e+0	At5g17847	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	HVSMEc0007N02r2_at	HVSMEc0007N02r2	-	-	3e-1	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig14242_at	Contig14242	-	-	1e+0	At5g42800	DFR (DIHYDROFLAVONOL 4-REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig9875_at	Contig9875	-	-	9e-3	At3g29100	VTI13	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig423_at	Contig423	-	-	5e-5	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig9631_at	Contig9631	-	-	9e-6	At1g19700	BEL10 (BEL1-LIKE HOMEODOMAIN 10)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig18416_at	Contig18416	-	-	3e+0	At1g62000	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.97	Contig8857_at	Contig8857	-	-	4e-1	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	Contig12407_at	Contig12407	-	-	7e-1	At2g44130	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	HVSMEm0005B11r2_x_at	HVSMEm0005B11r2	-	-	4e+0	At2g36020	HVA22J (HVA22-LIKE PROTEIN J)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	HB24H11r_s_at	HB24H11r	-	-	8e-1	At3g10590	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig5187_at	Contig5187	-	-	3e-9	At5g08420	RNA binding	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig5696_at	Contig5696	-	-	7e-3	At5g48335	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.2	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.4	94.8	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7	92.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.6	92.3	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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