Co-expression analysis

Gene ID Contig15028_at
Gene name
Homology with ArabidopsisSimilar to At1g35310: MLP168 (MLP-LIKE PROTEIN 168) (HF=4e-1)
Module size 27 genes
NF 0.27
%ile 34.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8494.30.92Contig15028_atContig15028--4e-1At1g35310MLP168 (MLP-LIKE PROTEIN 168)O.I.H.G.S.X.
0.4458.90.94Contig9688_s_atContig9688--7e+0At5g52970thylakoid lumen 15.0 kDa proteinO.I.H.G.S.X.
0.4356.40.94Contig24391_atContig24391--3e+0At5g41430zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4153.90.94Contig1576_atContig1576--2e+0At4g20680receptor-like protein kinase-relatedO.I.H.G.S.X.
0.4153.90.94Contig13117_atContig13117--6e-1At5g14740CA2 (CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.3849.50.95Contig8908_atContig8908--3e-12At2g21270ubiquitin fusion degradation UFD1 family proteinO.I.H.G.S.X.
0.3849.50.96Contig25611_atContig25611--2e-2At1g68870unknown proteinO.I.H.G.S.X.
0.3545.10.93Contig11245_atContig11245--1e-1At1g34780ATAPRL4 (APR-like 4)O.I.H.G.S.X.
0.3443.60.95Contig16299_atContig16299--2e+0At3g55960NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.3342.60.94Contig7940_x_atContig7940--9e-43At4g25550protein bindingO.I.H.G.S.X.
0.3342.60.95Contig9065_atContig9065--4e-77At5g22330RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)O.I.H.G.S.X.
0.3037.00.95Contig6814_atContig6814--7e-9At5g59140SKP1 family proteinO.I.H.G.S.X.
0.2935.50.95Contig21004_atContig21004--2e+1At5g19030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2935.50.94Contig13507_atContig13507--2e+0At4g24370unknown proteinO.I.H.G.S.X.
0.2935.50.95Contig7966_atContig7966--4e+0At2g42830SHP2 (SHATTERPROOF 2)O.I.H.G.S.X.
0.2835.50.95Contig9191_atContig9191--2e+0At2g18200unknown proteinO.I.H.G.S.X.
0.2732.10.94Contig15745_atContig15745--1e-1At1g35830VQ motif-containing proteinO.I.H.G.S.X.
0.2732.10.95Contig15831_atContig15831--1e+0At3g15190chloroplast 30S ribosomal protein S20, putativeO.I.H.G.S.X.
0.2630.40.95Contig6454_atContig6454--6e-1At3g50520phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.2224.20.95Contig8538_atContig8538--4e-2At2g04038AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48)O.I.H.G.S.X.
0.2021.10.96Contig16054_atContig16054--4e-1At1g06830glutaredoxin family proteinO.I.H.G.S.X.
0.1919.60.94Contig3497_s_atContig3497--4e+0At5g67190AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.1818.20.94Contig20130_atContig20130--2e+0At1g74860unknown proteinO.I.H.G.S.X.
0.1514.10.96Contig7044_atContig7044--4e-3At5g42090-O.I.H.G.S.X.
0.1412.90.94Contig9658_atContig9658CesA4 protein-3e-10At5g44030CESA4 (CELLULOSE SYNTHASE A4)O.I.H.G.S.X.
0.1311.60.95Contig16156_s_atContig16156--1e-4At1g71010phosphatidylinositol-4-phosphate 5-kinase family proteinO.I.H.G.S.X.
0.1210.40.94Contig1661_x_atContig1661--1e-1At3g48140senescence-associated protein, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.399.0GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.197.3GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.596.7GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.196.2GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.995.8GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.595.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
3.093.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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