Co-expression analysis

Gene ID	Contig14969_at
Gene name
Homology with Arabidopsis	Similar to At3g48860: unknown protein (HF=9e-2)
Module size	12 genes
NF	0.45
%ile	62.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.4	0.89	Contig14969_at	Contig14969	-	-	9e-2	At3g48860	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.93	Contig8892_at	Contig8892	flowering time control protein	-	4e-13	At4g16280	FCA	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.93	Contig18856_at	Contig18856	-	-	2e-6	At5g04940	SUVH1 (SU(VAR)3-9 HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig18436_s_at	Contig18436	-	-	1e+0	At2g18000	TAF14 (TBP-associated factor 14)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.92	Contig16172_at	Contig16172	-	-	2e+0	At3g12490	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig12129_at	Contig12129	-	-	2e-14	At4g30020	subtilase family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.91	Contig20311_at	Contig20311	-	-	3e-1	At3g51940	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.92	Contig19791_at	Contig19791	-	-	3e-1	At4g06534	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.92	Contig4486_at	Contig4486	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.92	Contig4779_s_at	Contig4779	-	-	2e-8	At3g53710	AGD6	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.92	rbags25e03_at	rbags25e03	-	-	3e+0	At3g26070	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.92	HF13G03r_at	HF13G03r	-	-	4e+0	At2g30020	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.2	99.7	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.9	98.9	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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