Co-expression analysis

Gene ID	Contig14966_at
Gene name
Homology with Arabidopsis	Similar to At3g54190: - (HF=7e-23)
Module size	7 genes
NF	0.22
%ile	27.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.95	Contig14966_at	Contig14966	-	-	7e-23	At3g54190	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig7546_s_at	Contig7546	-	-	1e+0	At1g63950	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig8530_at	Contig8530	-	-	1e-5	At4g33410	signal peptide peptidase family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig1813_s_at	Contig1813	-	-	1e-121	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig9136_at	Contig9136	-	-	1e-5	At3g51140	-	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig5696_at	Contig5696	-	-	7e-3	At5g48335	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig2811_at	Contig2811	-	-	3e-1	At1g21550	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.5	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
5.3	97.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.2	96.3	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
4.0	96.0	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9	95.8	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.8	95.7	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.7	95.5	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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