Co-expression analysis

Gene ID	Contig14946_at
Gene name
Homology with Arabidopsis	Similar to At2g46340: SPA1 (SUPPRESSOR OF PHYA-105 1) (HF=2e-1)
Module size	6 genes
NF	0.43
%ile	60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.93	Contig14946_at	Contig14946	-	-	2e-1	At2g46340	SPA1 (SUPPRESSOR OF PHYA-105 1)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.91	Contig4400_s_at	Contig4400	-	-	8e-3	At5g52050	MATE efflux protein-related	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	HVSMEf0001F23r2_x_at	HVSMEf0001F23r2	-	-	9e+0	At4g26030	transcription factor	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.92	Contig3802_at	Contig3802	-	-	3e-76	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	Contig3801_at	Contig3801	-	-	4e-26	At1g69840	band 7 family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	HV12C23u_x_at	HV12C23u	-	-	5e+0	At5g35475	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	93.8	GSM372972	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9	93.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.8	93.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7	92.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.6	92.3	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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