Co-expression analysis

Gene ID	Contig14945_at
Gene name
Homology with Arabidopsis	Similar to At4g16370: ATOPT3 (OLIGOPEPTIDE TRANSPORTER) (HF=8e-36)
Module size	8 genes
NF	0.07
%ile	8.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	95.2	0.93	Contig14945_at	Contig14945	-	-	8e-36	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.93	Contig16040_at	Contig16040	-	-	2e-4	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.93	Contig13841_at	Contig13841	-	-	2e+0	At2g34610	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	Contig20248_at	Contig20248	-	-	5e+0	At3g16880	F-box protein-related	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.91	HB03M23r_at	HB03M23r	-	-	5e+0	At3g46613	RTFL4 (ROTUNDIFOLIA LIKE 4)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.94	Contig13863_at	Contig13863	-	-	9e-1	At1g04778	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.95	Contig9392_at	Contig9392	-	-	5e+0	At5g62780	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.93	Contig15481_at	Contig15481	-	-	2e+0	At3g54170	ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.1	99.2	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.9	99.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.4	98.1	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.2	96.3	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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