Co-expression analysis

Gene ID Contig14904_at
Gene name
Homology with ArabidopsisSimilar to At2g28330: unknown protein (HF=2e+0)
Module size 7 genes
NF 0.40
%ile 55.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.97Contig14904_atContig14904--2e+0At2g28330unknown proteinO.I.H.G.S.X.
0.4458.90.97Contig16886_atContig16886--5e+0At5g60460sec61beta family proteinO.I.H.G.S.X.
0.4356.40.96Contig8332_atContig8332--2e-8At5g13020emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.
0.3138.60.96Contig9392_atContig9392--5e+0At5g62780DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3138.60.97HV_CEa0010M13r2_s_atHV_CEa0010M13r2--9e-1At4g01670unknown proteinO.I.H.G.S.X.
0.3037.00.96Contig9752_atContig9752--3e+0At2g11651unknown proteinO.I.H.G.S.X.
0.2935.50.96Contig13215_atContig13215--3e-10At5g49720ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.799.2GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.696.8GSM373002genotype: 11542 - pathogen isolates: K1 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.496.6GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.895.7GSM372987genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.494.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM372982genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.294.3GSM372984genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.893.1GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.893.1GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.692.3GSM130806JA and salinity stress, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.715.1.A1_s_at, orthologous to the query gene, Contig14904_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7192.6PtpAffx.715.1.A1_s_atAt2g28330hypothetical protein-9e-5At3g19170ATPREP1 (PRESEQUENCE PROTEASE 1)O.I.H.G.S.X.
0.6791.1PtpAffx.220888.1.S1_s_atAt2g28330hypothetical protein-0Atcg00270-O.I.H.G.S.X.
0.5380.5PtpAffx.218752.1.S1_s_atAt2g28330hypothetical protein-2e-124Atcg00280-O.I.H.G.S.X.
0.4471.9PtpAffx.107075.1.S1_atAt2g28330hypothetical protein-4e-50At3g19170ATPREP1 (PRESEQUENCE PROTEASE 1)O.I.H.G.S.X.
0.3559.7Ptp.3865.2.S1_a_atAt2g28330hypothetical protein-2e-6At1g71480nuclear transport factor 2 (NTF2) family proteinO.I.H.G.S.X.
0.2543.6PtpAffx.140205.1.A1_atAt2g28330--5e-7At2g47910CRR6 (chlororespiratory reduction 6)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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