CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig14904_at

Gene name
Homology with Arabidopsis Similar to At2g28330: unknown protein (HF=2e+0)

Module size 7 genes

NF 0.40

%ile 55.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 88.7 0.97 Contig14904_at Contig14904 - - 2e+0 At2g28330 unknown protein O.I. H.G. S.X.
0.44 58.9 0.97 Contig16886_at Contig16886 - - 5e+0 At5g60460 sec61beta family protein O.I. H.G. S.X.
0.43 56.4 0.96 Contig8332_at Contig8332 - - 2e-8 At5g13020 emsy N terminus domain-containing protein / ENT domain-containing protein O.I. H.G. S.X.
0.31 38.6 0.96 Contig9392_at Contig9392 - - 5e+0 At5g62780 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.31 38.6 0.97 HV_CEa0010M13r2_s_at HV_CEa0010M13r2 - - 9e-1 At4g01670 unknown protein O.I. H.G. S.X.
0.30 37.0 0.96 Contig9752_at Contig9752 - - 3e+0 At2g11651 unknown protein O.I. H.G. S.X.
0.29 35.5 0.96 Contig13215_at Contig13215 - - 3e-10 At5g49720 ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.7 99.2 GSM372981 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6 96.8 GSM373002 genotype: 11542 - pathogen isolates: K1 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4 96.6 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
3.8 95.7 GSM372987 genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4 94.8 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM372982 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2 94.3 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.8 93.1 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.8 93.1 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.6 92.3 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g28330, orthologous to the query gene, Contig14904_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.32 35.7 At2g28330 817380 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.25 22.6 At4g15950 827277 NRPD4 Non-catalytic subunit common to Nuclear DNA-dependent RNA polymerases IV and V; homologous to budding yeast RPB4 O.I. H.G. S.X.
0.22 17.5 At4g11450 826749 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;PMO O.I. H.G. S.X.
0.22 17.5 At4g37630 829917 CYCD5 core cell cycle genes O.I. H.G. S.X.
0.15 7.8 At3g63290 825504 unknown protein F:molecular_function unknown;P:pollen development;C:cellular_component unknown;FPOB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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