Co-expression analysis

Gene ID Contig14880_at
Gene name
Homology with ArabidopsisSimilar to At5g52600: AtMYB82 (myb domain protein 82) (HF=3e+0)
Module size 10 genes
NF 0.16
%ile 19.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.83Contig14880_atContig14880--3e+0At5g52600AtMYB82 (myb domain protein 82)O.I.H.G.S.X.
0.4458.90.88Contig19958_atContig19958--4e+0At3g28990unknown proteinO.I.H.G.S.X.
0.4255.20.88HD12A16r_atHD12A16r--7e-2At4g18190ATPUP6O.I.H.G.S.X.
0.3342.60.88Contig20150_atContig20150--1e-5At5g59030COPT1 (copper transporter 1)O.I.H.G.S.X.
0.2935.50.90Contig11041_atContig11041--1e+0At3g08940LHCB4.2 (light harvesting complex PSII)O.I.H.G.S.X.
0.2224.20.92Contig11168_atContig11168--1e-15At5g12480CPK7 (calmodulin-domain protein kinase 7)O.I.H.G.S.X.
0.1919.60.85Contig2165_atContig2165--9e-35At4g13930SHM4 (serine hydroxymethyltransferase 4)O.I.H.G.S.X.
0.1818.20.88Contig1127_atContig1127--8e-24At1g07790HTB1O.I.H.G.S.X.
0.086.50.86Contig1830_atContig1830--6e-3At3g51810EM1 (LATE EMBRYOGENESIS ABUNDANT 1)O.I.H.G.S.X.
0.064.80.85Contig7379_atContig7379--1e-11At3g03330short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.0GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.396.4GSM419977Palea_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.396.4GSM440965Control palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.995.8GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.995.8GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.895.7GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.795.5GSM146364Maythorpe Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.695.3GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
3.595.1GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.595.1GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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