Co-expression analysis

Gene ID	Contig14780_at
Gene name
Homology with Arabidopsis	Similar to At2g35960: NHL12 (HF=3e-1)
Module size	7 genes
NF	0.32
%ile	42.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.95	Contig14780_at	Contig14780	-	-	3e-1	At2g35960	NHL12	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	HU05P16u_s_at	HU05P16u	-	-	4e+0	At3g29670	transferase family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig21168_at	Contig21168	-	-	2e+0	At2g39550	PGGT-I	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig8938_at	Contig8938	-	-	7e-9	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig10279_at	Contig10279	-	-	3e+0	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig18385_at	Contig18385	-	-	2e+0	Atmg01170	-	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.2	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
23.2	99.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.1	99.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
11.0	99.2	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.9	99.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.4	98.5	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.0	98.4	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.5	97.6	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.3	97.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.1	97.3	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1177.1.S1_at, orthologous to the query gene, Contig14780_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	ZmAffx.1177.1.S1_at	At2g35960	-	-	7e-2	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.17189.1.A1_at	At2g35960	-	-	5e+0	At5g60540	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.2548.1.A1_at	At2g35960	-	-	2e-26	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.7750.4.S1_at	At2g35960	-	-	3e-28	At1g75780	TUB1	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.15280.2.A1_at	At2g35960	-	-	9e+0	At5g19650	OFP8 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.14898.1.A1_x_at	At2g35960	-	-	4e+0	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.18084.1.A1_at	At2g35960	-	-	8e-7	At1g16870	mitochondrial 28S ribosomal protein S29-related	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.6828.1.A1_at	At2g35960	-	-	2e-1	At1g02710	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	ZmAffx.824.1.S1_at	At2g35960	-	-	3e+0	At5g20370	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.28	28.1	ZmAffx.996.1.A1_at	At2g35960	-	-	3e+0	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.15489.1.A1_at	At2g35960	hypothetical protein LOC100191928 /// hypothetical protein LOC100192092	-	2e-5	At3g18170	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.4774.1.A1_at	At2g35960	hypothetical protein LOC100191958	-	1e+0	At3g26360	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.11611.1.A1_at	At2g35960	hypothetical protein LOC100192942	-	5e+0	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	O.I.	H.G.	S.X.	Please select
0.25	21.3	ZmAffx.398.1.A1_at	At2g35960	-	-	3e+0	At4g15150	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.11338.1.A1_at	At2g35960	hypothetical protein LOC100274516	-	3e-6	At2g40190	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	ZmAffx.536.1.A1_at	At2g35960	-	-	1e+1	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.17742.1.A1_at	At2g35960	hypothetical protein LOC100279932	-	6e-9	At5g51220	ubiquinol-cytochrome C chaperone family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	ZmAffx.1052.1.A1_at	At2g35960	-	-	3e+0	At1g75090	methyladenine glycosylase family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.18607.1.A1_at	At2g35960	-	-	2e+0	At3g29720	transferase-related	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.2397.1.A1_at	At2g35960	nucleolin	-	2e+0	At1g64710	alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.547.1.A1_at	At2g35960	glutathione transferase17	-	1e-1	At1g02405	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	ZmAffx.562.1.A1_at	At2g35960	-	-	3e+0	At4g17483	palmitoyl protein thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	Zm.14524.1.S1_at	At2g35960	hypothetical protein LOC100272454	-	8e-3	At4g38620	MYB4	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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