Co-expression analysis

Gene ID	Contig14780_at
Gene name
Homology with Arabidopsis	Similar to At2g35960: NHL12 (HF=3e-1)
Module size	7 genes
NF	0.32
%ile	42.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.95	Contig14780_at	Contig14780	-	-	3e-1	At2g35960	NHL12	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	HU05P16u_s_at	HU05P16u	-	-	4e+0	At3g29670	transferase family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig21168_at	Contig21168	-	-	2e+0	At2g39550	PGGT-I	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig8938_at	Contig8938	-	-	7e-9	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig10279_at	Contig10279	-	-	3e+0	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig18385_at	Contig18385	-	-	2e+0	Atmg01170	-	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.2	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
23.2	99.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.1	99.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
11.0	99.2	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.9	99.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.4	98.5	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.0	98.4	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.5	97.6	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.3	97.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.1	97.3	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.212770.1.S1_at, orthologous to the query gene, Contig14780_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	PtpAffx.212770.1.S1_at	At2g35960	hypothetical protein	-	7e-9	At1g27510	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.82953.1.S1_s_at	At2g35960	hypothetical protein	-	7e+0	At5g44973	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.154880.1.S1_at	At2g35960	hypothetical protein	-	1e-3	At4g38225	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.723.2.S1_a_at	At2g35960	hypothetical protein	-	2e-34	At5g13720	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.214769.1.S1_s_at	At2g35960	hypothetical protein	-	3e-41	At3g58140	phenylalanyl-tRNA synthetase class IIc family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.157536.1.S1_at	At2g35960	hypothetical protein	-	1e-19	At1g49970	CLPR1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.218659.1.S1_at	At2g35960	hypothetical protein	-	5e-3	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.4296.2.S1_at	At2g35960	peptide deformylase	-	9e-17	At5g14660	PDF1B (PEPTIDE DEFORMYLASE 1B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.68644.1.S1_at	At2g35960	hypothetical protein	-	4e-10	At4g17300	NS1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.132845.1.S1_at	At2g35960	hypothetical protein	-	1e-75	At3g58140	phenylalanyl-tRNA synthetase class IIc family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.6060.1.S1_at	At2g35960	hypothetical protein	-	9e-161	At1g06430	FTSH8	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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