CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig14763_at

Gene name
Homology with Arabidopsis Similar to At2g37510: RNA-binding protein, putative (HF=2e-1)

Module size 6 genes

NF 0.64

%ile 86.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.99 Contig14763_at Contig14763 - - 2e-1 At2g37510 RNA-binding protein, putative O.I. H.G. S.X.
0.67 84.7 0.98 Contig16012_at Contig16012 - - 3e+0 At3g57490 40S ribosomal protein S2 (RPS2D) O.I. H.G. S.X.
0.57 74.9 0.99 HY09M22u_s_at HY09M22u - - 3e+0 At2g04378 beta-galactosidase O.I. H.G. S.X.
0.53 69.7 0.98 Contig21003_at Contig21003 - - 6e+0 At5g17280 unknown protein O.I. H.G. S.X.
0.53 69.7 0.98 Contig20949_at Contig20949 - - 2e+0 At4g34150 C2 domain-containing protein O.I. H.G. S.X.
0.40 53.1 0.99 Contig19492_at Contig19492 - - 5e-1 At5g41340 UBC4 (UBIQUITIN CONJUGATING ENZYME 4) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.99	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.67	84.7	0.98	Contig16012_at	Contig16012	-	-	3e+0	At3g57490	40S ribosomal protein S2 (RPS2D)	O.I.	H.G.	S.X.
0.57	74.9	0.99	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	O.I.	H.G.	S.X.
0.53	69.7	0.98	Contig21003_at	Contig21003	-	-	6e+0	At5g17280	unknown protein	O.I.	H.G.	S.X.
0.53	69.7	0.98	Contig20949_at	Contig20949	-	-	2e+0	At4g34150	C2 domain-containing protein	O.I.	H.G.	S.X.
0.40	53.1	0.99	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	84.7	0.98	Contig10241_at	Contig10241	-	-	2e-9	At1g29120	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.98	Contig23530_s_at	Contig23530	-	-	8e+0	At3g57072	unknown protein	O.I.	H.G.	S.X.
0.61	78.7	0.98	Contig18109_at	Contig18109	-	-	2e-15	At2g26980	CIPK3 (CBL-INTERACTING PROTEIN KINASE 3)	O.I.	H.G.	S.X.
0.61	78.7	0.98	Contig18092_at	Contig18092	-	-	8e-4	At1g76680	OPR1	O.I.	H.G.	S.X.
0.61	78.7	0.98	HM01F24T_s_at	HM01F24T	-	-	4e-5	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.
0.59	75.8	0.97	Contig26282_at	Contig26282	-	-	6e+0	At4g12350	MYB42 (myb domain protein 42)	O.I.	H.G.	S.X.
0.56	74.3	0.98	HS18F06u_s_at	HS18F06u	-	-	7e-14	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.
0.55	72.0	0.98	Contig24524_at	Contig24524	-	-	1e+0	At5g06130	chaperone protein dnaJ-related	O.I.	H.G.	S.X.
0.53	69.7	0.98	Contig15982_at	Contig15982	-	-	3e-4	At3g19290	ABF4 (ABRE BINDING FACTOR 4)	O.I.	H.G.	S.X.
0.50	66.9	0.95	Contig4129_at	Contig4129	-	-	9e-26	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.
0.50	66.9	0.98	Contig22905_at	Contig22905	-	-	4e-1	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.
0.46	61.0	0.97	Contig26100_at	Contig26100	-	-	2e+0	At1g53460	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.97	Contig19871_at	Contig19871	-	-	4e+0	At4g11060	MTSSB (mitochondrially targeted single-stranded DNA binding protein)	O.I.	H.G.	S.X.
0.44	58.9	0.97	Contig16694_at	Contig16694	-	-	2e-3	At1g58420	-	O.I.	H.G.	S.X.
0.44	58.9	0.97	Contig3675_at	Contig3675	-	-	2e-10	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	O.I.	H.G.	S.X.
0.44	58.9	0.98	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.44	58.9	0.98	Contig22688_at	Contig22688	-	-	2e+0	At2g01860	EMB975 (EMBRYO DEFECTIVE 975)	O.I.	H.G.	S.X.
0.44	58.9	0.98	Contig14735_at	Contig14735	-	-	6e-6	At1g12470	Pep3/Vps18/deep orange family protein	O.I.	H.G.	S.X.
0.43	56.4	0.98	Contig2584_at	Contig2584	-	-	1e-6	At3g53890	40S ribosomal protein S21 (RPS21B)	O.I.	H.G.	S.X.
0.42	55.2	0.98	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	O.I.	H.G.	S.X.
0.42	55.2	0.98	EBma03_SQ002_K01_s_at	EBma03_SQ002_K01	-	-	5e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig3409_at	Contig3409	-	-	5e-7	At5g65260	polyadenylate-binding protein family protein / PABP family protein	O.I.	H.G.	S.X.
0.40	53.1	0.98	EBem09_SQ001_B21_s_at	EBem09_SQ001_B21	-	-	2e+0	At5g36920	unknown protein	O.I.	H.G.	S.X.
0.39	50.5	0.98	Contig2738_s_at	Contig2738	-	-	2e-1	At4g27820	BGLU9 (BETA GLUCOSIDASE 9)	O.I.	H.G.	S.X.
0.39	50.5	0.98	Contig23732_at	Contig23732	-	-	6e-1	At1g05190	emb2394 (embryo defective 2394)	O.I.	H.G.	S.X.
0.38	49.5	0.98	Contig16972_at	Contig16972	-	-	5e-10	At5g64813	LIP1 (Light Insensitive Period1)	O.I.	H.G.	S.X.
0.38	49.5	0.98	Contig20018_at	Contig20018	-	-	2e-5	At1g24350	-	O.I.	H.G.	S.X.
0.37	47.9	0.97	Contig3963_at	Contig3963	-	-	7e-39	At4g19210	ATRLI2	O.I.	H.G.	S.X.
0.36	47.1	0.96	Contig13642_at	Contig13642	-	-	9e-1	At2g18840	integral membrane Yip1 family protein	O.I.	H.G.	S.X.
0.36	47.1	0.97	Contig25223_at	Contig25223	-	-	1e+0	At2g39900	LIM domain-containing protein	O.I.	H.G.	S.X.
0.36	47.1	0.97	Contig14985_at	Contig14985	-	-	9e+0	At5g52965	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.97	Contig16602_at	Contig16602	-	-	2e+0	At5g23035	-	O.I.	H.G.	S.X.
0.35	45.1	0.95	HB22P12r_x_at	HB22P12r	-	-	4e-30	At1g07930	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.
0.35	45.1	0.97	Contig3573_s_at	Contig3573	-	-	6e-1	At3g23600	dienelactone hydrolase family protein	O.I.	H.G.	S.X.
0.35	45.1	0.96	Contig15344_at	Contig15344	-	-	4e-1	At1g56290	CwfJ-like family protein	O.I.	H.G.	S.X.
0.35	45.1	0.96	HY02N18u_s_at	HY02N18u	-	-	8e+0	Atmg01050	-	O.I.	H.G.	S.X.
0.35	45.1	0.97	Contig18403_at	Contig18403	-	-	3e-1	At1g73490	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.35	45.1	0.98	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	O.I.	H.G.	S.X.
0.33	42.6	0.97	Contig3602_at	Contig3602	-	-	2e+0	At4g22950	AGL19 (AGAMOUS-LIKE 19)	O.I.	H.G.	S.X.
0.33	42.6	0.98	Contig25214_at	Contig25214	-	-	1e+0	At3g26935	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.
0.33	42.6	0.98	Contig20936_at	Contig20936	-	-	3e-5	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.
0.32	40.3	0.97	rbasd18a22_s_at	rbasd18a22	-	-	3e-3	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.
0.32	40.3	0.96	Contig13348_at	Contig13348	-	-	3e+0	At4g38160	pde191 (pigment defective 191)	O.I.	H.G.	S.X.
0.32	40.3	0.98	Contig3735_at	Contig3735	-	-	2e-1	At2g02100	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)	O.I.	H.G.	S.X.
0.31	38.6	0.95	Contig2848_at	Contig2848	-	-	4e-8	At1g44910	protein binding	O.I.	H.G.	S.X.
0.31	38.6	0.97	Contig2301_at	Contig2301	-	-	4e-32	At5g60670	60S ribosomal protein L12 (RPL12C)	O.I.	H.G.	S.X.
0.30	37.0	0.97	EBem09_SQ001_H19_s_at	EBem09_SQ001_H19	-	-	2e-41	At3g23390	60S ribosomal protein L36a/L44 (RPL36aA)	O.I.	H.G.	S.X.
0.29	35.5	0.97	Contig26480_at	Contig26480	-	-	2e+0	At1g62070	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.95	HW02F22u_at	HW02F22u	-	-	7e+0	At3g14981	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.96	Contig6501_s_at	Contig6501	-	-	2e+1	At5g18540	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.0 99.8 GSM261042 before 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4 99.2 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
5.8 97.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
5.1 97.3 GSM261043 before 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1 97.3 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
5.0 97.2 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.9 97.1 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.4 96.6 GSM261044 before 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9 95.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
23.0	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4	99.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.4	96.6	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Contig14763_at
Gene name
Homology with Arabidopsis	Similar to At2g37510: RNA-binding protein, putative (HF=2e-1)
Module size	6 genes
NF	0.64
%ile	86.1

Co-expression analysis

Gene ID Contig14763_at Gene name Homology with ArabidopsisSimilar to At2g37510: RNA-binding protein, putative (HF=2e-1) Module size 6 genes NF 0.64 %ile 86.1

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig14763_at

Gene name
Homology with Arabidopsis Similar to At2g37510: RNA-binding protein, putative (HF=2e-1)

Module size 6 genes

NF 0.64

%ile 86.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays