Co-expression analysis

Gene ID	Contig14763_at
Gene name
Homology with Arabidopsis	Similar to At2g37510: RNA-binding protein, putative (HF=2e-1)
Module size	6 genes
NF	0.64
%ile	86.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.99	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig16012_at	Contig16012	-	-	3e+0	At3g57490	40S ribosomal protein S2 (RPS2D)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.99	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.98	Contig21003_at	Contig21003	-	-	6e+0	At5g17280	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.98	Contig20949_at	Contig20949	-	-	2e+0	At4g34150	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.99	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.0	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4	99.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.4	96.6	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.202010.1.S1_at, orthologous to the query gene, Contig14763_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.202010.1.S1_at	At2g37510	hypothetical protein	-	3e-4	At1g58470	ATRBP1 (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	Ptp.1145.1.A1_at	At2g37510	hypothetical protein	-	5e-26	At1g60170	emb1220 (embryo defective 1220)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.163577.1.S1_at	At2g37510	hypothetical protein	-	1e-13	At2g41945	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.201256.1.S1_s_at	At2g37510	hypothetical protein	-	1e-6	At1g50620	PHD finger family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.95687.1.A1_at	At2g37510	hypothetical protein	-	4e-4	At2g25010	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.210621.1.S1_s_at	At2g37510	histone acetyltransferase /// histone acetyltransferase	-	0	At5g50320	ELO3 (ELONGATA 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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