CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig14763_at

Gene name
Homology with Arabidopsis Similar to At2g37510: RNA-binding protein, putative (HF=2e-1)

Module size 6 genes

NF 0.64

%ile 86.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.99 Contig14763_at Contig14763 - - 2e-1 At2g37510 RNA-binding protein, putative O.I. H.G. S.X.
0.67 84.7 0.98 Contig16012_at Contig16012 - - 3e+0 At3g57490 40S ribosomal protein S2 (RPS2D) O.I. H.G. S.X.
0.57 74.9 0.99 HY09M22u_s_at HY09M22u - - 3e+0 At2g04378 beta-galactosidase O.I. H.G. S.X.
0.53 69.7 0.98 Contig21003_at Contig21003 - - 6e+0 At5g17280 unknown protein O.I. H.G. S.X.
0.53 69.7 0.98 Contig20949_at Contig20949 - - 2e+0 At4g34150 C2 domain-containing protein O.I. H.G. S.X.
0.40 53.1 0.99 Contig19492_at Contig19492 - - 5e-1 At5g41340 UBC4 (UBIQUITIN CONJUGATING ENZYME 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.0 99.8 GSM261042 before 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4 99.2 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
5.8 97.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
5.1 97.3 GSM261043 before 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1 97.3 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
5.0 97.2 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.9 97.1 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.4 96.6 GSM261044 before 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9 95.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the rice gene, Os07g0124600, orthologous to the query gene, Contig14763_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os07g0124600 At2g37510 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 7e-1 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.44 58.1 Os06g0687500 At2g37510 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e+0 At4g29330 DER1 (DERLIN-1) O.I. H.G. S.X.
0.38 46.9 Os01g0510100 At2g37510 - MAP kinase kinase 1 5e-30 At5g56580 MKK6 (MAP KINASE KINASE 6) O.I. H.G. S.X.
0.33 38.8 Os03g0820700 At2g37510 - Gag polyprotein 8e-1 At1g75560 zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.25 24.1 Os02g0480900 At2g37510 - Ataxin-2, N-terminal domain containing protein 2e+0 At2g33200 F-box family protein O.I. H.G. S.X.
0.23 21.2 Os04g0685600 At2g37510 - Exo70 exocyst complex subunit family protein 1e-12 At5g03540 ATEXO70A1 (exocyst subunit EXO70 family protein A1) O.I. H.G. S.X.
0.23 21.2 Os02g0221500 At2g37510 - Paraneoplastic encephalomyelitis antigen familyprotein 1e-3 At5g40490 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.23 21.2 Os07g0586500 At2g37510 - SUMO activating enzyme 2 6e-43 At2g21470 SAE2 (SUMO-ACTIVATING ENZYME 2) O.I. H.G. S.X.
0.21 17.9 Os08g0522600 At2g37510 - Chaperone protein dnaJ (40 kDa heat shockchaperone protein) (HSP40) 5e-18 At1g21080 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.21 17.9 Os06g0566100 At2g37510 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-1 At5g40490 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.17 12.6 Os01g0960000 At2g37510 - Conserved hypothetical protein 4e-7 At5g09310 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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