Co-expression analysis

Gene ID	Contig14763_at
Gene name
Homology with Arabidopsis	Similar to At2g37510: RNA-binding protein, putative (HF=2e-1)
Module size	6 genes
NF	0.64
%ile	86.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.99	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig16012_at	Contig16012	-	-	3e+0	At3g57490	40S ribosomal protein S2 (RPS2D)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.99	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.98	Contig21003_at	Contig21003	-	-	6e+0	At5g17280	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.98	Contig20949_at	Contig20949	-	-	2e+0	At4g34150	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.99	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.0	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4	99.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.4	96.6	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, Gma.16817.1.S1_s_at, orthologous to the query gene, Contig14763_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	93.0	Gma.16817.1.S1_s_at	At2g37510	glycine-rich RNA-binding protein	-	2e-5	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.60	80.7	Gma.4214.1.S1_at	At2g37510	mitogen-activated protein kinase 2	-	5e-70	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.	Please select
0.58	78.8	Gma.15488.1.S1_s_at	At2g37510	-	-	2e-74	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please select
0.57	78.8	Gma.2954.1.S1_at	At2g37510	-	-	4e-34	At5g55160	SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)	O.I.	H.G.	S.X.	Please select
0.55	76.3	Gma.5964.1.S1_at	At2g37510	-	-	3e-62	At3g13235	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	Gma.3626.2.S1_x_at	At2g37510	-	-	2e-60	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	O.I.	H.G.	S.X.	Please select
0.52	73.1	Gma.5581.1.S1_at	At2g37510	-	-	8e-53	At3g27430	PBB1	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.11256.1.S1_at	At2g37510	-	-	7e-28	At1g56450	PBG1	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.17432.1.S1_s_at	At2g37510	-	-	1e-4	At3g22320	NRPB5	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.4485.1.S1_x_at	At2g37510	-	-	8e-13	At1g61250	SC3 (SECRETORY CARRIER 3)	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.17905.2.S1_at	At2g37510	-	-	8e-37	At4g01320	ATSTE24	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.6353.1.S1_at	At2g37510	-	-	1e-4	At1g67250	proteasome maturation factor UMP1 family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.85336.1.S1_at	At2g37510	-	-	5e-18	At1g69510	-	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.18012.1.S1_s_at	At2g37510	-	-	8e-28	At4g36690	ATU2AF65A	O.I.	H.G.	S.X.	Please select
0.41	58.1	Gma.6150.2.S1_s_at	At2g37510	-	-	1e-23	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.80262.1.S1_at	At2g37510	-	-	1e+0	At1g01250	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.10823.1.S1_at	At2g37510	-	-	3e-32	At1g65220	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.3626.2.S1_a_at	At2g37510	-	-	4e-52	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.11232.1.S1_s_at	At2g37510	-	-	0	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.16051.1.S1_at	At2g37510	-	-	6e-25	At3g04780	-	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.8209.1.S1_at	At2g37510	-	-	2e-47	At5g58100	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.2892.1.S1_at	At2g37510	-	-	3e-36	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.16756.1.S1_x_at	At2g37510	-	-	4e-66	At3g52560	UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.10826.5.S1_x_at	At2g37510	-	-	2e-108	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.15387.1.S1_s_at	At2g37510	-	-	8e-55	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.34	47.2	GmaAffx.56409.1.S1_at	At2g37510	-	-	1e-16	At1g08750	GPI-anchor transamidase, putative	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.87924.1.S1_at	At2g37510	-	-	9e-39	At3g05000	transport protein particle (TRAPP) component Bet3 family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.6207.1.S1_s_at	At2g37510	-	-	7e-16	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.17145.2.S1_at	At2g37510	-	-	0	At2g18450	SDH1-2	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.2314.1.S1_at	At2g37510	-	-	1e-33	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.92542.1.S1_s_at	At2g37510	-	-	1e-43	At5g45550	mob1/phocein family protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.17781.1.A1_s_at	At2g37510	-	-	3e-32	At5g11340	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.3084.2.S1_a_at	At2g37510	-	-	1e+0	At2g24395	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.5720.1.S1_s_at	At2g37510	-	-	4e-5	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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