CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig14763_at

Gene name
Homology with Arabidopsis Similar to At2g37510: RNA-binding protein, putative (HF=2e-1)

Module size 6 genes

NF 0.64

%ile 86.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.99 Contig14763_at Contig14763 - - 2e-1 At2g37510 RNA-binding protein, putative O.I. H.G. S.X.
0.67 84.7 0.98 Contig16012_at Contig16012 - - 3e+0 At3g57490 40S ribosomal protein S2 (RPS2D) O.I. H.G. S.X.
0.57 74.9 0.99 HY09M22u_s_at HY09M22u - - 3e+0 At2g04378 beta-galactosidase O.I. H.G. S.X.
0.53 69.7 0.98 Contig21003_at Contig21003 - - 6e+0 At5g17280 unknown protein O.I. H.G. S.X.
0.53 69.7 0.98 Contig20949_at Contig20949 - - 2e+0 At4g34150 C2 domain-containing protein O.I. H.G. S.X.
0.40 53.1 0.99 Contig19492_at Contig19492 - - 5e-1 At5g41340 UBC4 (UBIQUITIN CONJUGATING ENZYME 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.0 99.8 GSM261042 before 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4 99.2 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
5.8 97.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
5.1 97.3 GSM261043 before 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1 97.3 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
5.0 97.2 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.9 97.1 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.4 96.6 GSM261044 before 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9 95.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g37510, orthologous to the query gene, Contig14763_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g37510 818327 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA O.I. H.G. S.X.
0.10 3.4 At5g38110 833791 ASF1B (ANTI- SILENCING FUNCTION 1B) This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation. O.I. H.G. S.X.
0.01 0.2 At4g40000 830161 NOL1/NOP2/sun family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFAP O.I. H.G. S.X.
0.01 0.2 At2g35605 818127 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMV O.I. H.G. S.X.
0.01 0.2 At1g04900 839386 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBOPM O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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