Co-expression analysis

Gene ID	Contig14748_at
Gene name
Homology with Arabidopsis	Similar to At4g02482: chloroplast outer envelope GTP-binding protein, putative (HF=5e+0)
Module size	20 genes
NF	0.55
%ile	76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.66	81.5	0.81	Contig14748_at	Contig14748	-	-	5e+0	At4g02482	chloroplast outer envelope GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.89	Contig14554_at	Contig14554	-	-	7e+0	At5g06240	emb2735 (embryo defective 2735)	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.88	Contig25140_at	Contig25140	-	-	1e-10	At2g47570	60S ribosomal protein L18 (RPL18A)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Contig16930_at	Contig16930	-	-	1e+0	At3g20430	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.86	HB20B10r_at	HB20B10r	-	-	8e+0	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.87	Contig21980_at	Contig21980	-	-	1e-1	At3g24450	copper-binding family protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.84	Contig13936_at	Contig13936	-	-	4e+0	At2g32280	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.86	Contig17530_at	Contig17530	-	-	6e-3	At4g00380	XH/XS domain-containing protein / XS zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.84	HI05D22u_at	HI05D22u	-	-	7e-2	At5g58860	CYP86A1 (CYTOCHROME P450 86 A1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.89	Contig7448_s_at	Contig7448	-	-	1e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.88	Contig7450_at	Contig7450	-	-	7e+0	At3g21055	PSBTN (photosystem II subunit T)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.89	HVSMEf0006B06f_at	HVSMEf0006B06f	-	-	1e-2	At4g30380	EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.91	HW03J01T_at	HW03J01T	-	-	3e-1	At1g78130	UNE2 (unfertilized embryo sac 2)	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.88	HB31O02r_at	HB31O02r	-	-	4e-3	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.86	HM02K20r_at	HM02K20r	-	-	3e+0	At4g20290	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.87	HZ48K22r_at	HZ48K22r	-	-	3e-13	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.89	Contig21939_at	Contig21939	-	-	5e+0	At5g17523	-	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.88	Contig18897_at	Contig18897	-	-	1e-8	At5g46390	peptidase S41 family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.87	Contig2446_at	Contig2446	-	-	1e+0	At2g37480	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.87	HM10J16r_at	HM10J16r	-	-	4e+0	At5g64400	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.7	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.5	98.6	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2	97.4	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.1	97.3	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.5	96.7	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.2	96.3	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.1	96.2	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage