Co-expression analysis

Gene ID	Contig14726_at
Gene name
Homology with Arabidopsis	Similar to At3g10020: unknown protein (HF=2e+0)
Module size	19 genes
NF	0.40
%ile	54.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.94	Contig14726_at	Contig14726	-	-	2e+0	At3g10020	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.95	Contig8938_at	Contig8938	-	-	7e-9	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig6149_at	Contig6149	-	-	4e-16	At2g43810	small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.95	Contig14405_at	Contig14405	-	-	7e-1	At1g71050	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig7191_at	Contig7191	-	-	3e+0	At5g17950	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	HU05P16u_s_at	HU05P16u	-	-	4e+0	At3g29670	transferase family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig14472_at	Contig14472	-	-	4e-8	At1g28440	HSL1 (HAESA-Like 1)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig18254_at	Contig18254	-	-	2e-1	At5g26220	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig7166_s_at	Contig7166	CesA3 protein	-	1e-16	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig10279_at	Contig10279	-	-	3e+0	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	HB20G11r_s_at	HB20G11r	-	-	3e+0	At3g03626	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig8415_at	Contig8415	-	-	2e-5	At2g33510	protein binding	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig12398_at	Contig12398	-	-	2e-1	At2g31240	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig5161_s_at	Contig5161	-	-	9e-3	At1g54860	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig12918_at	Contig12918	-	-	3e+1	At5g02280	synbindin, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig18385_at	Contig18385	-	-	2e+0	Atmg01170	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	99.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.2	99.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.2	96.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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