Co-expression analysis

Gene ID Contig14639_at
Gene name
Homology with ArabidopsisSimilar to At5g47175: LCR3 (Low-molecular-weight cysteine-rich 3) (HF=8e+0)
Module size 7 genes
NF 0.35
%ile 47.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5572.00.95Contig14639_atContig14639--8e+0At5g47175LCR3 (Low-molecular-weight cysteine-rich 3)O.I.H.G.S.X.
0.6784.70.95Contig5879_atContig5879--8e-1At4g35630PSATO.I.H.G.S.X.
0.3950.50.95Contig9852_atContig9852--2e+1At5g62260DNA bindingO.I.H.G.S.X.
0.3849.50.96Contig14017_atContig14017--3e-1At5g08290YLS8O.I.H.G.S.X.
0.3037.00.95Contig21004_atContig21004--2e+1At5g19030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3037.00.96Contig7117_atContig7117--8e-4At3g17880ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)O.I.H.G.S.X.
0.2021.10.95Contig15889_atContig15889--2e+0At4g29590methyltransferaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.598.2GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.197.3GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.097.2GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
4.596.7GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.496.6GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.995.8GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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