Co-expression analysis

Gene ID	Contig14638_at
Gene name
Homology with Arabidopsis	Similar to At4g30800: 40S ribosomal protein S11 (RPS11B) (HF=4e-35)
Module size	11 genes
NF	0.74
%ile	93.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.93	Contig14638_at	Contig14638	-	-	4e-35	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.94	Contig7120_at	Contig7120	-	-	4e-18	At1g55880	pyridoxal-5'-phosphate-dependent enzyme, beta family protein	O.I.	H.G.	S.X.	Please select
0.84	94.3	0.94	Contig7301_at	Contig7301	-	-	3e-1	At5g26070	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.95	Contig4455_at	Contig4455	-	-	5e-1	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.94	Contig15033_at	Contig15033	-	-	2e-16	At3g17850	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.94	Contig6638_at	Contig6638	-	-	1e+0	At1g21880	LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.94	Contig327_s_at	Contig327	-	-	2e-2	At2g23310	ATRER1C1	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.95	Contig3480_at	Contig3480	-	-	4e-1	At5g16660	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.94	Contig15729_at	Contig15729	-	-	3e-2	At3g11280	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.94	Contig4453_at	Contig4453	-	-	3e-3	At1g14700	PAP3 (PURPLE ACID PHOSPHATASE 3)	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.94	HK04P18r_s_at	HK04P18r	CesA6 protein	-	2e+1	Atcg00130	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	99.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.2	97.4	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.8	97.0	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.7	96.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.3	96.4	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.9	95.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.5	95.1	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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