Co-expression analysis

Gene ID Contig14599_at
Gene name
Homology with ArabidopsisSimilar to At3g17160: unknown protein (HF=3e-2)
Module size 6 genes
NF 0.73
%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig14599_atContig14599--3e-2At3g17160unknown proteinO.I.H.G.S.X.
0.8092.50.96Contig1056_s_atContig1056--5e-140At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.7388.70.96Contig13783_atContig13783--4e-1At2g41225unknown proteinO.I.H.G.S.X.
0.6784.70.96Contig13988_atContig13988--5e-4At4g24020NLP7 (NIN LIKE PROTEIN 7)O.I.H.G.S.X.
0.5774.90.96Contig6826_s_atContig6826--8e-1At2g15535LCR10 (Low-molecular-weight cysteine-rich 10)O.I.H.G.S.X.
0.5066.90.97Contig12434_atContig12434--2e-6At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.8GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
8.398.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.798.3GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.497.5GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.097.2GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.696.8GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
4.396.4GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
4.396.4GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
3.995.8GSM130800control, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.12326.1.S1_at, orthologous to the query gene, Contig14599_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7389.9Zm.12326.1.S1_atAt3g17160hypothetical protein LOC100278585-8e-2At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.8094.0ZmAffx.391.1.S1_atAt3g17160--1e-2At2g25685SCRL17 (SCR-Like 17)O.I.H.G.S.X.
0.6785.8ZmAffx.227.1.S1_atAt3g17160--3e+0At5g50410unknown proteinO.I.H.G.S.X.
0.6077.8Zm.2591.1.A1_atAt3g17160autophagy-related 8c-4e-51At1g62040ATG8C (autophagy 8c)O.I.H.G.S.X.
0.3844.2Zm.7010.3.S1_atAt3g17160--5e-2At2g32100OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)O.I.H.G.S.X.
0.2828.1Zm.3303.2.A1_atAt3g17160lipoxygenase-3e+0At3g22400LOX5O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage