CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig14599_at

Gene name
Homology with Arabidopsis Similar to At3g17160: unknown protein (HF=3e-2)

Module size 6 genes

NF 0.73

%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.96 Contig14599_at Contig14599 - - 3e-2 At3g17160 unknown protein O.I. H.G. S.X.
0.80 92.5 0.96 Contig1056_s_at Contig1056 - - 5e-140 At4g05050 UBQ11 (UBIQUITIN 11) O.I. H.G. S.X.
0.73 88.7 0.96 Contig13783_at Contig13783 - - 4e-1 At2g41225 unknown protein O.I. H.G. S.X.
0.67 84.7 0.96 Contig13988_at Contig13988 - - 5e-4 At4g24020 NLP7 (NIN LIKE PROTEIN 7) O.I. H.G. S.X.
0.57 74.9 0.96 Contig6826_s_at Contig6826 - - 8e-1 At2g15535 LCR10 (Low-molecular-weight cysteine-rich 10) O.I. H.G. S.X.
0.50 66.9 0.97 Contig12434_at Contig12434 - - 2e-6 At4g30930 NFD1 (NUCLEAR FUSION DEFECTIVE 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.6 98.8 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
8.3 98.8 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.7 98.3 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4 97.5 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.0 97.2 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
4.6 96.8 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
4.3 96.4 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
4.3 96.4 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9 95.8 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
3.9 95.8 GSM130800 control, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment

Inter-species module comparison

A co-expression module including the rice gene, Os03g0279600, orthologous to the query gene, Contig14599_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 Os03g0279600 At3g17160 - Hypothetical protein 6e-1 At1g12665 - O.I. H.G. S.X.
0.63 82.7 Os01g0158900 At3g17160 - Zn-finger, NF-X1 type domain containing protein 2e-3 At5g05660 ATNFXL2 O.I. H.G. S.X.
0.61 81.2 Os02g0208100 At3g17160 - Plastidic ATP/ADP transporter (Fragment) 2e-15 At1g15500 ATNTT2 O.I. H.G. S.X.
0.50 68.0 Os10g0377800 At3g17160 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) 4e-3 At5g49970 ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE) O.I. H.G. S.X.
0.40 51.1 Os01g0711100 At3g17160 - Peptidase M16, C-terminal domain containingprotein 9e-1 At3g02090 mitochondrial processing peptidase beta subunit, putative O.I. H.G. S.X.
0.32 36.3 Os01g0872700 At3g17160 - Putative 5-3 exonuclease domain containing protein 2e-19 At1g75660 XRN3 O.I. H.G. S.X.
0.29 31.1 Os02g0712000 At3g17160 - PDZ/DHR/GLGF domain containing protein 1e-10 At3g03380 DegP7 (DegP protease 7) O.I. H.G. S.X.
0.17 12.6 Os06g0367900 At3g17160 - Mitogen-activated protein kinase homologue 6e-61 At1g53510 ATMPK18 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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