Co-expression analysis

Gene ID	Contig14599_at
Gene name
Homology with Arabidopsis	Similar to At3g17160: unknown protein (HF=3e-2)
Module size	6 genes
NF	0.73
%ile	93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig14599_at	Contig14599	-	-	3e-2	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig6826_s_at	Contig6826	-	-	8e-1	At2g15535	LCR10 (Low-molecular-weight cysteine-rich 10)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	98.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.3	98.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.7	98.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.0	97.2	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
4.6	96.8	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.3	96.4	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
4.3	96.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.9	95.8	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment

Inter-species module comparison

A co-expression module including the soybean gene, Gma.8157.1.S1_at, orthologous to the query gene, Contig14599_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	Gma.8157.1.S1_at	At3g17160	-	-	6e-7	At3g53630	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.3707.1.S1_at	At3g17160	-	-	4e-1	At4g18210	ATPUP10	O.I.	H.G.	S.X.	Please select
0.52	73.1	Gma.12369.1.S1_at	At3g17160	-	-	5e-1	At3g19560	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.12351.1.S1_s_at	At3g17160	-	-	5e+0	At3g27503	SCRL19 (SCR-Like 19)	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.10674.1.S1_at	At3g17160	-	-	4e-17	At2g34160	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.1859.1.A1_s_at	At3g17160	-	-	8e-15	At2g44860	60S ribosomal protein L24, putative	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.16295.1.A1_at	At3g17160	-	-	9e-1	At3g53740	60S ribosomal protein L36 (RPL36B)	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.6107.1.S1_at	At3g17160	-	-	4e-92	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.42933.1.S1_at	At3g17160	-	-	3e+0	At4g22000	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.3659.1.S1_at	At3g17160	-	-	1e-1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.16887.2.S1_at	At3g17160	-	-	2e-37	At4g31300	PBA1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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