Co-expression analysis

Gene ID	Contig14594_at
Gene name
Homology with Arabidopsis	Similar to At5g54080: HGO (HOMOGENTISATE 1,2-DIOXYGENASE) (HF=5e-17)
Module size	6 genes
NF	0.83
%ile	97.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig14594_at	Contig14594	-	-	5e-17	At5g54080	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.95	Contig12640_at	Contig12640	-	-	5e-1	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.95	Contig15825_at	Contig15825	-	-	8e+0	At5g03020	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.95	Contig12750_at	Contig12750	-	-	5e-1	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig8260_s_at	Contig8260	-	-	2e+0	At1g65230	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.95	Contig5567_s_at	Contig5567	-	-	8e-35	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.7	99.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.3	99.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.3	99.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.0	96.0	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
4.0	96.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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