Co-expression analysis

Gene ID	Contig14590_at
Gene name
Homology with Arabidopsis	Similar to At3g11810: unknown protein (HF=2e-2)
Module size	7 genes
NF	0.50
%ile	70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.89	Contig14590_at	Contig14590	-	-	2e-2	At3g11810	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	Contig24765_at	Contig24765	-	-	1e+0	At1g03170	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.90	HVSMEg0005G16r2_at	HVSMEg0005G16r2	-	-	5e+0	At5g57410	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.89	rbags19e09_s_at	rbags19e09	-	-	3e+0	At1g37150	HCS2 (holocarboxylase synthetase 2)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.90	Contig1453_x_at	Contig1453	-	-	6e-38	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.90	Contig18655_at	Contig18655	-	-	1e+0	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.89	Contig12809_at	Contig12809	-	-	4e-1	At4g18975	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	99.4	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
12.1	99.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.6	99.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.8	98.9	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.9	97.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.8	97.8	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.6	97.7	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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