Co-expression analysis

Gene ID	Contig14554_at
Gene name
Homology with Arabidopsis	Similar to At5g06240: emb2735 (embryo defective 2735) (HF=7e+0)
Module size	24 genes
NF	0.65
%ile	86.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	95.2	0.88	Contig14554_at	Contig14554	-	-	7e+0	At5g06240	emb2735 (embryo defective 2735)	O.I.	H.G.	S.X.	Please select
0.81	92.8	0.89	Contig21939_at	Contig21939	-	-	5e+0	At5g17523	-	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.88	Contig16930_at	Contig16930	-	-	1e+0	At3g20430	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.87	Contig7450_at	Contig7450	-	-	7e+0	At3g21055	PSBTN (photosystem II subunit T)	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.89	Contig7448_s_at	Contig7448	-	-	1e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.86	HZ48K22r_at	HZ48K22r	-	-	3e-13	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.90	HW03J01T_at	HW03J01T	-	-	3e-1	At1g78130	UNE2 (unfertilized embryo sac 2)	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.87	HVSMEf0006B06f_at	HVSMEf0006B06f	-	-	1e-2	At4g30380	EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.87	Contig13869_at	Contig13869	-	-	7e-10	At1g54610	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig2446_at	Contig2446	-	-	1e+0	At2g37480	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.83	HB20B10r_at	HB20B10r	-	-	8e+0	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.89	Contig18897_at	Contig18897	-	-	1e-8	At5g46390	peptidase S41 family protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.87	Contig25140_at	Contig25140	-	-	1e-10	At2g47570	60S ribosomal protein L18 (RPL18A)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.87	Contig21257_s_at	Contig21257	-	-	1e+0	At5g67520	adenylylsulfate kinase, putative	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.87	Contig13867_s_at	Contig13867	-	-	6e-3	At2g02840	-	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.85	HB31O02r_at	HB31O02r	-	-	4e-3	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.92	Contig25867_at	Contig25867	-	-	5e-2	At2g21490	LEA (DEHYDRIN LEA)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.93	Contig10263_at	Contig10263	-	-	6e+0	Atmg00285	-	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.86	Contig21980_at	Contig21980	-	-	1e-1	At3g24450	copper-binding family protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.92	Contig11422_s_at	Contig11422	-	-	1e-2	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.89	Contig25707_at	Contig25707	-	-	1e-2	At4g21340	B70	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.88	Contig599_at	Contig599	-	-	1e-6	At5g60390	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.92	Contig17985_at	Contig17985	-	-	5e+0	At4g35987	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.90	Contig17984_at	Contig17984	-	-	2e+0	At5g47930	40S ribosomal protein S27 (RPS27D)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	98.9	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
8.8	98.9	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
8.7	98.9	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.4	98.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.7	98.6	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.5	98.6	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.4	98.5	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.9	98.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.7	98.3	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.5	98.2	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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