Co-expression analysis

Gene ID Contig14526_at
Gene name
Homology with ArabidopsisSimilar to At2g21790: RNR1 (RIBONUCLEOTIDE REDUCTASE 1) (HF=2e-16)
Module size 6 genes
NF 0.54
%ile 74.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.2935.50.83Contig14526_atContig14526--2e-16At2g21790RNR1 (RIBONUCLEOTIDE REDUCTASE 1)O.I.H.G.S.X.
0.8092.50.90Contig6235_s_atContig6235--1e+0At3g27850RPL12-C (ribosomal protein l12-c)O.I.H.G.S.X.
0.7388.70.88Contig15767_atContig15767--1e-1At1g21520unknown proteinO.I.H.G.S.X.
0.6784.70.89Contig6238_s_atContig6238--1e-7At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)O.I.H.G.S.X.
0.6178.70.87Contig6233_s_atContig6233--3e-8At5g08790ATAF2O.I.H.G.S.X.
0.3138.60.88Contig3365_atContig3365--2e-85At1g09100RPT5B (26S proteasome AAA-ATPase subunit RPT5B)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.70.83rbah58n17_s_atrbah58n17--1e+0At1g77855unknown proteinO.I.H.G.S.X.
0.4458.90.82AF026538_atAF026538ABA-responsive protein-7e-1At2g37580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4458.90.87HVSMEf0003F23r2_atHVSMEf0003F23r2--9e-1At5g09570-O.I.H.G.S.X.
0.3849.50.85HC112E03_T3_s_atHC112E03_T3ABA-responsive protein-1e-3At5g23360GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.3545.10.79HT10N20u_s_atHT10N20u--5e+0At5g15620F-box family proteinO.I.H.G.S.X.
0.3342.60.80HI04F14u_atHI04F14u--4e+0At5g16486-O.I.H.G.S.X.
0.3240.30.82Contig26206_atContig26206--7e-2At4g21620glycine-rich proteinO.I.H.G.S.X.
0.3240.30.83Contig12695_atContig12695--2e-3At2g43560immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.3240.30.82Contig1803_atContig1803--1e-19At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.3138.60.73rbags11h24_atrbags11h24--3e+0At4g33985unknown proteinO.I.H.G.S.X.
0.2732.10.76HVSMEn0024O03f_s_atHVSMEn0024O03f--3e+0At5g40370glutaredoxin, putativeO.I.H.G.S.X.
0.2732.10.87Contig6433_atContig6433--5e-1At5g66460(1-4)-beta-mannan endohydrolase, putativeO.I.H.G.S.X.
0.2630.40.87Contig6431_atContig6431--3e-1At2g18110elongation factor 1-beta, putative / EF-1-beta, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.998.9GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
7.098.4GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.498.1GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.198.0GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.497.5GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.297.4GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.097.2GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.596.7GSM261078Albina e-16 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.296.3GSM261065Xantha s-46 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.196.2GSM261060Xantha b-12 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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