Co-expression analysis

Gene ID	Contig14526_at
Gene name
Homology with Arabidopsis	Similar to At2g21790: RNR1 (RIBONUCLEOTIDE REDUCTASE 1) (HF=2e-16)
Module size	6 genes
NF	0.54
%ile	74.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.29	35.5	0.83	Contig14526_at	Contig14526	-	-	2e-16	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.90	Contig6235_s_at	Contig6235	-	-	1e+0	At3g27850	RPL12-C (ribosomal protein l12-c)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.88	Contig15767_at	Contig15767	-	-	1e-1	At1g21520	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	Contig6238_s_at	Contig6238	-	-	1e-7	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.87	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.88	Contig3365_at	Contig3365	-	-	2e-85	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.9	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0	98.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1	98.0	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4	97.5	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the wheat gene, Ta.25584.1.S1_at, orthologous to the query gene, Contig14526_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	82.0	Ta.25584.1.S1_at	At2g21790	-	-	4e-21	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.9534.2.A1_a_at	At2g21790	-	-	5e-6	At3g15380	choline transporter-related	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.13256.1.A1_a_at	At2g21790	-	-	2e+1	At5g41210	ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.23801.1.S1_at	At2g21790	-	-	5e+0	At1g65445	transferase-related	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.13256.1.A1_x_at	At2g21790	-	-	2e+1	At5g41210	ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.4062.1.S1_x_at	At2g21790	-	-	2e-1	At4g38420	sks9 (SKU5 Similar 9)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.4062.2.A1_at	At2g21790	-	-	1e+0	At2g01505	CLE16 (CLAVATA3/ESR-RELATED 16)	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.7835.2.S1_at	At2g21790	-	-	2e+0	At3g19280	FUT11 (FUCOSYLTRANSFERASE 11)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.27708.1.S1_at	At2g21790	protein H2B-6	-	3e-15	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.18582.1.S1_at	At2g21790	-	-	2e+0	At5g10870	ATCM2 (chorismate mutase 2)	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.29357.1.A1_at	At2g21790	-	-	6e-13	At1g63260	TET10 (TETRASPANIN10)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.6286.1.S1_at	At2g21790	-	-	1e-4	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.14590.3.S1_at	At2g21790	-	-	2e+0	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.27708.1.S1_x_at	At2g21790	protein H2B-6	-	3e-15	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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