Co-expression analysis

Gene ID	Contig14526_at
Gene name
Homology with Arabidopsis	Similar to At2g21790: RNR1 (RIBONUCLEOTIDE REDUCTASE 1) (HF=2e-16)
Module size	6 genes
NF	0.54
%ile	74.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.29	35.5	0.83	Contig14526_at	Contig14526	-	-	2e-16	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.90	Contig6235_s_at	Contig6235	-	-	1e+0	At3g27850	RPL12-C (ribosomal protein l12-c)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.88	Contig15767_at	Contig15767	-	-	1e-1	At1g21520	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	Contig6238_s_at	Contig6238	-	-	1e-7	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.87	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.88	Contig3365_at	Contig3365	-	-	2e-85	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.9	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0	98.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1	98.0	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4	97.5	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.11483.1.A1_at, orthologous to the query gene, Contig14526_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	PtpAffx.11483.1.A1_at	At2g21790	hypothetical protein	-	2e-29	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	PtpAffx.210484.1.S1_at	At2g21790	hypothetical protein	-	1e+0	At5g44265	lipid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.202461.1.S1_s_at	At2g21790	hypothetical protein	-	1e-18	At3g07800	thymidine kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.205229.1.S1_s_at	At2g21790	hypothetical protein	-	0	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.202461.1.S1_at	At2g21790	hypothetical protein	-	1e-18	At3g07800	thymidine kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.34799.1.S1_at	At2g21790	hypothetical protein	-	3e-48	At2g16440	DNA replication licensing factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.203419.1.S1_at	At2g21790	hypothetical protein	-	4e-24	At1g67320	DNA primase, large subunit family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.1634.1.A1_at	At2g21790	hypothetical protein	-	4e-2	At2g42860	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.40163.1.A1_at	At2g21790	-	-	9e-45	At5g59910	HTB4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.106520.1.A1_at	At2g21790	hypothetical protein	-	4e-63	At2g05990	MOD1 (MOSAIC DEATH 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.132026.1.A1_s_at	At2g21790	hypothetical protein	-	5e+0	At5g03905	hesB-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.24672.2.A1_a_at	At2g21790	hypothetical protein	-	6e-18	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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