CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig14526_at

Gene name
Homology with Arabidopsis Similar to At2g21790: RNR1 (RIBONUCLEOTIDE REDUCTASE 1) (HF=2e-16)

Module size 6 genes

NF 0.54

%ile 74.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.29 35.5 0.83 Contig14526_at Contig14526 - - 2e-16 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) O.I. H.G. S.X.
0.80 92.5 0.90 Contig6235_s_at Contig6235 - - 1e+0 At3g27850 RPL12-C (ribosomal protein l12-c) O.I. H.G. S.X.
0.73 88.7 0.88 Contig15767_at Contig15767 - - 1e-1 At1g21520 unknown protein O.I. H.G. S.X.
0.67 84.7 0.89 Contig6238_s_at Contig6238 - - 1e-7 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) O.I. H.G. S.X.
0.61 78.7 0.87 Contig6233_s_at Contig6233 - - 3e-8 At5g08790 ATAF2 O.I. H.G. S.X.
0.31 38.6 0.88 Contig3365_at Contig3365 - - 2e-85 At1g09100 RPT5B (26S proteasome AAA-ATPase subunit RPT5B) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.9 98.9 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0 98.4 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4 98.1 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1 98.0 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4 97.5 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2 97.4 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0 97.2 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5 96.7 GSM261078 Albina e-16 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2 96.3 GSM261065 Xantha s-46 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1 96.2 GSM261060 Xantha b-12 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g21790, orthologous to the query gene, Contig14526_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At2g21790 816715 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair O.I. H.G. S.X.
0.75 86.9 At1g07370 837249 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation. O.I. H.G. S.X.
0.60 75.7 At2g29570 817506 PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) Functionally interacts with POLH to repair DNA damaged by UVB damage. O.I. H.G. S.X.
0.57 73.8 At5g10390 830903 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. H.G. S.X.
0.32 35.7 At5g61000 836221 replication protein, putative F:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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