Co-expression analysis

Gene ID	Contig14516_at
Gene name	glutathione synthetase
Homology with Arabidopsis	Similar to At5g27380: GSH2 (GLUTATHIONE SYNTHETASE 2) (HF=3e-2)
Module size	6 genes
NF	0.34
%ile	45.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.94	Contig14516_at	Contig14516	glutathione synthetase	-	3e-2	At5g27380	GSH2 (GLUTATHIONE SYNTHETASE 2)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig24660_at	Contig24660	-	-	6e+0	Atmg00680	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig12503_at	Contig12503	-	-	7e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig19125_at	Contig19125	-	-	4e-3	At2g33980	atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	HZ65L19r_at	HZ65L19r	-	-	8e-1	At3g25860	LTA2	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	HVSMEi0011P17r2_at	HVSMEi0011P17r2	-	-	9e-2	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.8	95.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.9	93.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.9	93.4	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.9	93.4	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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