Co-expression analysis

Gene ID	Contig14515_at
Gene name
Homology with Arabidopsis	Similar to At1g43610: NLI interacting factor (NIF) family protein (HF=2e+0)
Module size	6 genes
NF	0.12
%ile	15.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.92	Contig14515_at	Contig14515	-	-	2e+0	At1g43610	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.92	Contig17786_at	Contig17786	-	-	3e-5	At4g27640	importin beta-2 subunit family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.93	Contig25850_at	Contig25850	-	-	4e-4	At5g67490	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.92	Contig13012_at	Contig13012	-	-	2e-3	At1g68400	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.92	Contig7674_at	Contig7674	-	-	2e-4	At5g61770	PPAN (PETER PAN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.93	Contig23330_at	Contig23330	-	-	5e-1	At1g49475	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
50.4	99.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.0	99.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.2	99.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.7	97.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM363466	10 mM B(OH)3 treatment (10B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
3.8	95.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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