CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig14498_at

Gene name
Homology with Arabidopsis Similar to At2g43590: chitinase, putative (HF=9e-3)

Module size 9 genes

NF 0.56

%ile 78.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 80.9 0.86 Contig14498_at Contig14498 - - 9e-3 At2g43590 chitinase, putative O.I. H.G. S.X.
0.70 86.0 0.89 Contig20846_at Contig20846 - - 3e-6 At4g36860 zinc ion binding O.I. H.G. S.X.
0.59 75.8 0.92 Contig11836_at Contig11836 - - 6e-10 At1g22650 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative O.I. H.G. S.X.
0.59 75.8 0.92 Contig18444_at Contig18444 - - 2e+0 At1g08650 PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE) O.I. H.G. S.X.
0.50 66.9 0.89 Contig6633_at Contig6633 - - 4e+0 At4g17310 unknown protein O.I. H.G. S.X.
0.47 62.2 0.90 Contig6634_at Contig6634 - - 9e-4 At3g09470 - O.I. H.G. S.X.
0.46 61.0 0.91 Contig78_s_at Contig78 - - 4e-5 At1g15690 AVP1 O.I. H.G. S.X.
0.43 56.4 0.90 Contig2490_at Contig2490 - - 1e-6 At1g62660 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar O.I. H.G. S.X.
0.38 49.5 0.91 Contig18440_at Contig18440 - - 2e+0 At3g56590 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.5 97.6 GSM372942 genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4 96.6 GSM372941 genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0 96.0 GSM372973 genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8 95.7 GSM372972 genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM372953 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM372959 genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5 95.1 GSM372969 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4 94.8 GSM372968 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2 94.3 GSM372960 genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2 94.3 GSM372971 genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the grape gene, 1617192_at, orthologous to the query gene, Contig14498_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 1617192_at At2g43590 class IV chitinase - 4e-2 At2g43570 chitinase, putative O.I. H.G. S.X.
0.67 87.9 1616445_at At2g43590 hypothetical protein LOC100262839 - 1e+0 At5g67060 HEC1 (HECATE 1) O.I. H.G. S.X.
0.62 83.3 1615581_at At2g43590 - - 1e+0 At1g29540 unknown protein O.I. H.G. S.X.
0.60 81.9 1607475_s_at At2g43590 O-methyltransferase-like - 6e-6 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) O.I. H.G. S.X.
0.56 79.4 1609218_at At2g43590 - - 3e-1 At4g40030 histone H3.2 O.I. H.G. S.X.
0.54 75.7 1620342_at At2g43590 O-methyltransferase-like - 3e-5 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) O.I. H.G. S.X.
0.54 75.7 1607058_at At2g43590 hypothetical protein LOC100251716 - 7e-5 At2g46110 KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1) O.I. H.G. S.X.
0.53 75.2 1617355_at At2g43590 hypothetical protein LOC100251716 - 9e-23 At3g61530 PANB2 O.I. H.G. S.X.
0.53 75.2 1612722_at At2g43590 hypothetical protein LOC100264158 - 2e+0 At4g18100 60S ribosomal protein L32 (RPL32A) O.I. H.G. S.X.
0.53 75.2 1611385_at At2g43590 - - 1e+1 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) O.I. H.G. S.X.
0.53 75.2 1613344_at At2g43590 - - 4e+0 At5g17650 glycine/proline-rich protein O.I. H.G. S.X.
0.51 73.2 1610800_at At2g43590 - - 2e+0 At2g35370 GDCH O.I. H.G. S.X.
0.45 64.6 1622670_s_at At2g43590 hypothetical protein LOC100242012 - 1e+1 At5g05590 PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2) O.I. H.G. S.X.
0.41 58.7 1615458_at At2g43590 hypothetical protein LOC100255664 - 2e+0 At5g16490 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) O.I. H.G. S.X.
0.40 57.7 1609744_at At2g43590 hypothetical protein LOC100240811 /// hypothetical protein LOC100263073 - 2e+0 At3g42630 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.37 51.7 1614141_at At2g43590 hypothetical protein LOC100265131 - 1e-9 At2g31090 unknown protein O.I. H.G. S.X.
0.35 48.5 1610363_at At2g43590 hypothetical protein LOC100267452 - 9e-32 At3g62150 PGP21 (P-GLYCOPROTEIN 21) O.I. H.G. S.X.
0.29 37.7 1607713_s_at At2g43590 serine hydrolase-like - 1e-1 At4g26210 mitochondrial ATP synthase g subunit family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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