Co-expression analysis

Gene ID	Contig14472_at
Gene name
Homology with Arabidopsis	Similar to At1g28440: HSL1 (HAESA-Like 1) (HF=4e-8)
Module size	9 genes
NF	0.50
%ile	70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.1	0.96	Contig14472_at	Contig14472	-	-	4e-8	At1g28440	HSL1 (HAESA-Like 1)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	Contig725_s_at	Contig725	-	-	1e-15	At1g21750	ATPDIL1-1 (PDI-LIKE 1-1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig12398_at	Contig12398	-	-	2e-1	At2g31240	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig125_at	Contig125	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig13413_at	Contig13413	-	-	1e+0	At3g46210	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage