Co-expression analysis

Gene ID	Contig14457_at
Gene name
Homology with Arabidopsis	Similar to At2g44525: unknown protein (HF=6e-3)
Module size	18 genes
NF	0.29
%ile	37.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	74.9	0.92	Contig14457_at	Contig14457	-	-	6e-3	At2g44525	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.94	Contig7818_s_at	Contig7818	-	-	2e-2	At5g02502	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	Contig3853_s_at	Contig3853	-	-	6e+0	At5g11860	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig3530_at	Contig3530	-	-	4e-37	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig3269_at	Contig3269	-	-	2e-19	At1g13060	PBE1	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	Contig4907_s_at	Contig4907	-	-	5e-4	At1g66340	ETR1 (ETHYLENE RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig10280_at	Contig10280	-	-	7e-22	At5g20510	AL5 (ALFIN-LIKE 5)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig3007_s_at	Contig3007	-	-	3e-7	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig5871_at	Contig5871	-	-	2e+0	At2g38860	YLS5	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig9709_s_at	Contig9709	-	-	2e-7	At3g60800	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig5354_at	Contig5354	-	-	4e-33	At5g06140	SNX1 (SORTING NEXIN 1)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig8739_at	Contig8739	-	-	3e-6	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig11553_at	Contig11553	-	-	2e-4	At1g15860	-	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig13811_at	Contig13811	-	-	4e-2	At2g20630	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig4192_at	Contig4192	-	-	2e-4	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	HVSMEk0006H23r2_at	HVSMEk0006H23r2	-	-	2e-1	At1g18760	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.93	Contig5246_s_at	Contig5246	-	-	3e-13	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig4890_at	Contig4890	-	-	5e-4	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.7	99.5	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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