Co-expression analysis

Gene ID Contig14425_at
Gene name
Homology with ArabidopsisSimilar to At5g45710: RHA1 (ROOT HANDEDNESS 1) (HF=2e+0)
Module size 16 genes
NF 0.11
%ile 14.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5874.90.84Contig14425_atContig14425--2e+0At5g45710RHA1 (ROOT HANDEDNESS 1)O.I.H.G.S.X.
0.4053.10.86Contig17745_atContig17745--6e+0At5g42630ATS (ABERRANT TESTA SHAPE)O.I.H.G.S.X.
0.2935.50.90rbags17a19_s_atrbags17a19--2e+0At5g66985unknown proteinO.I.H.G.S.X.
0.2224.20.89Contig8486_atContig8486--5e-18At3g28180ATCSLC04 (CELLULOSE-SYNTHASE LIKE C4)O.I.H.G.S.X.
0.1716.90.86Contig1728_atContig1728--1e-14At1g07890APX1 (ascorbate peroxidase 1)O.I.H.G.S.X.
0.1514.10.89Contig16982_atContig16982--2e+0At3g56650thylakoid lumenal 20 kDa proteinO.I.H.G.S.X.
0.1412.90.91Contig21112_atContig21112--6e+0At5g23360GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.1311.60.86Contig3232_atContig3232--1e-37At2g44350ATCSO.I.H.G.S.X.
0.1311.60.88Contig5508_atContig5508--2e-1At3g03990esterase/lipase/thioesterase family proteinO.I.H.G.S.X.
0.1210.40.88Contig20799_atContig20799--4e+0At1g02880TPK1 (THIAMIN PYROPHOSPHOKINASE1)O.I.H.G.S.X.
0.119.40.87Contig3852_atContig3852--6e-23At1g60730aldo/keto reductase family proteinO.I.H.G.S.X.
0.119.40.91HVSMEl0002M03r2_x_atHVSMEl0002M03r2--4e+1At5g55630ATKCO1O.I.H.G.S.X.
0.108.40.91HVSMEl0024B05r2_atHVSMEl0024B05r2--4e+0At5g08480VQ motif-containing proteinO.I.H.G.S.X.
0.086.50.89Contig11840_s_atContig11840--3e-2At2g25720unknown proteinO.I.H.G.S.X.
0.064.80.87Contig10202_atContig10202--1e-14At5g08020RPA70B (RPA70-KDA SUBUNIT B)O.I.H.G.S.X.
0.032.60.86Contig13615_atContig13615--1e-5At4g15120VQ motif-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.795.5GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM3634635 mM B(OH)3 treatment (5B) - rep1GSE14521Late response to boron toxicity in barley leavesLink to GEO
3.595.1GSM363461Control (C) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
3.394.6GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM3634645 mM B(OH)3 treatment (5B) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
2.692.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.591.9GSM3634655 mM B(OH)3 treatment (5B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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