Co-expression analysis

Gene ID	Contig14353_at
Gene name
Homology with Arabidopsis	Similar to At1g49950: DNA-binding protein, putative (HF=9e-3)
Module size	7 genes
NF	0.87
%ile	98.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.93	Contig14353_at	Contig14353	-	-	9e-3	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.93	Contig24888_at	Contig24888	-	-	1e+0	At2g26940	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.93	Contig6587_s_at	Contig6587	-	-	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.93	rbags16i08_s_at	rbags16i08	-	-	8e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.94	Contig2750_s_at	Contig2750	-	-	4e-15	At2g33150	PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.94	Contig2749_at	Contig2749	-	-	1e+0	At1g03055	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.93	Contig2748_at	Contig2748	-	-	1e-2	At4g20130	PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.5	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.1	98.4	GSM372952	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.1	98.4	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.6	98.2	GSM372951	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.4	98.1	GSM372949	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3	96.4	GSM71153	Barke stress and unstress replicate 4	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.2	96.3	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage