Co-expression analysis

Gene ID	Contig14330_at
Gene name
Homology with Arabidopsis	Similar to At3g29034: unknown protein (HF=6e-3)
Module size	6 genes
NF	0.26
%ile	33.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.76	Contig14330_at	Contig14330	-	-	6e-3	At3g29034	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.81	Contig12182_at	Contig12182	-	-	2e+0	At2g45800	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.75	Contig11273_at	Contig11273	-	-	2e-13	At1g63170	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.75	HVSMEb0017F04f_at	HVSMEb0017F04f	-	-	3e+0	At4g31410	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.78	HVSMEh0080E23r2_s_at	HVSMEh0080E23r2	-	-	9e+0	At5g43185	Expressed protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.74	Contig13817_s_at	Contig13817	-	-	4e-14	At1g54160	NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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