Co-expression analysis

Gene ID	Contig14296_at
Gene name
Homology with Arabidopsis	Similar to At1g07140: SIRANBP (HF=4e+0)
Module size	7 genes
NF	0.56
%ile	77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.91	Contig14296_at	Contig14296	-	-	4e+0	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.91	Contig14921_s_at	Contig14921	-	-	3e+0	At4g38370	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.91	Contig20510_at	Contig20510	-	-	4e+0	At4g00355	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.88	Contig9144_at	Contig9144	-	-	1e-15	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.91	Contig12950_at	Contig12950	-	-	3e-6	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig10076_at	Contig10076	-	-	5e-15	At4g13020	MHK	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig17293_at	Contig17293	-	-	1e-1	At5g57790	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.9	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.6	95.3	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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