Co-expression analysis

Gene ID	Contig14251_at
Gene name
Homology with Arabidopsis	Similar to At2g46170: reticulon family protein (RTNLB5) (HF=4e+0)
Module size	6 genes
NF	0.32
%ile	43.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.95	Contig14251_at	Contig14251	-	-	4e+0	At2g46170	reticulon family protein (RTNLB5)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig10458_s_at	Contig10458	-	-	6e+0	At3g44350	anac061 (Arabidopsis NAC domain containing protein 61)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig21004_at	Contig21004	-	-	2e+1	At5g19030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig7044_at	Contig7044	-	-	4e-3	At5g42090	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig7152_at	Contig7152	-	-	2e-34	At3g58600	-	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.96	Contig1498_s_at	Contig1498	-	-	7e-12	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.6	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.9	95.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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