Co-expression analysis

Gene ID	Contig14167_at
Gene name
Homology with Arabidopsis	Similar to At3g14480: glycine/proline-rich protein (HF=2e-3)
Module size	31 genes
NF	0.29
%ile	38.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	95.4	0.83	Contig14167_at	Contig14167	-	-	2e-3	At3g14480	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.89	Contig16172_at	Contig16172	-	-	2e+0	At3g12490	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.89	HS05C18u_at	HS05C18u	-	-	1e+1	At5g35470	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.91	Contig18491_at	Contig18491	-	-	1e-2	At3g48425	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.90	Contig13079_at	Contig13079	-	-	9e-12	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.89	Contig24192_at	Contig24192	-	-	1e+0	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.86	HVSMEi0012N18r2_at	HVSMEi0012N18r2	-	-	1e+1	At5g18310	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.90	Contig16748_at	Contig16748	-	-	1e+0	At5g65165	SDH2-3	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.88	Contig10409_s_at	Contig10409	-	-	2e+0	At1g54200	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.92	Contig23071_at	Contig23071	-	-	2e+0	At1g13195	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.91	Contig8895_at	Contig8895	-	-	7e-4	At1g19600	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	Contig11358_at	Contig11358	-	-	4e-2	At1g11690	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.92	Contig8892_at	Contig8892	flowering time control protein	-	4e-13	At4g16280	FCA	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.90	Contig20143_at	Contig20143	-	-	2e+0	At4g30450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.93	Contig18436_s_at	Contig18436	-	-	1e+0	At2g18000	TAF14 (TBP-associated factor 14)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.92	Contig4779_s_at	Contig4779	-	-	2e-8	At3g53710	AGD6	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.91	Contig13591_at	Contig13591	-	-	8e-47	At5g01230	FtsJ-like methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.92	Contig18856_at	Contig18856	-	-	2e-6	At5g04940	SUVH1 (SU(VAR)3-9 HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.89	Contig17640_at	Contig17640	-	-	7e+0	At5g26667	PYR6	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.85	EBpi01_SQ002_N22_s_at	EBpi01_SQ002_N22	-	-	9e+0	At4g21090	adrenodoxin-like ferredoxin 1	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.89	Contig23933_at	Contig23933	-	-	9e-1	At3g15550	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.92	Contig13426_at	Contig13426	-	-	8e-6	At2g45695	-	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.90	Contig12129_at	Contig12129	-	-	2e-14	At4g30020	subtilase family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.88	Contig1762_s_at	Contig1762	-	-	4e-1	At1g28330	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig12727_at	Contig12727	-	-	1e-7	At4g02840	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.85	Contig18140_at	Contig18140	-	-	6e-1	At5g57310	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.90	HW01E20u_x_at	HW01E20u	-	-	2e+0	At4g23882	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.92	Contig18772_at	Contig18772	-	-	5e+0	At5g46990	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.89	Contig13188_at	Contig13188	-	-	1e-4	At5g58540	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.87	Contig11540_at	Contig11540	-	-	3e+0	At3g44190	pyridine nucleotide-disulphide oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.93	Contig10107_at	Contig10107	-	-	2e-1	At1g17070	D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.1	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.0	93.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.4	91.4	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.4	91.4	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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