Co-expression analysis

Gene ID	Contig14075_at
Gene name
Homology with Arabidopsis	Similar to At2g41560: ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4) (HF=6e-33)
Module size	12 genes
NF	0.25
%ile	31.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.71	Contig14075_at	Contig14075	-	-	6e-33	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.80	Contig6007_at	Contig6007	-	-	2e+1	At5g61412	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.84	Contig2302_at	Contig2302	-	-	1e-25	At5g60670	60S ribosomal protein L12 (RPL12C)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.85	HX05P09r_at	HX05P09r	-	-	9e-1	At5g60350	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.85	Contig10370_at	Contig10370	-	-	2e-12	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.86	HM10K10r_at	HM10K10r	-	-	2e-2	At3g10185	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.84	Contig15476_at	Contig15476	-	-	2e+0	At1g48325	Expressed protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.87	rbags25g01_at	rbags25g01	-	-	1e+0	At5g22880	HTB2	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.79	Contig23388_at	Contig23388	-	-	6e-1	At1g70600	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.78	HX01D24w_at	HX01D24w	-	-	1e+0	At3g25400	-	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.78	Contig15106_at	Contig15106	-	-	1e-2	At3g04370	PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.81	HV_CEb0011B08r2_at	HV_CEb0011B08r2	-	-	4e+0	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.3	99.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM68893	3 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
7.2	98.5	GSM363460	Control (C) - rep1	GSE14521	Late response to boron toxicity in barley leaves
6.5	98.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
5.5	97.6	GSM363462	Control (C) - rep3	GSE14521	Late response to boron toxicity in barley leaves
4.6	96.8	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
4.5	96.7	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage