Co-expression analysis

Gene ID	Contig14065_at
Gene name
Homology with Arabidopsis	Similar to At5g49770: leucine-rich repeat transmembrane protein kinase, putative (HF=6e-8)
Module size	10 genes
NF	0.66
%ile	87.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.94	Contig14065_at	Contig14065	-	-	6e-8	At5g49770	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.95	HF19N13r_s_at	HF19N13r	-	-	3e+0	At1g24147	unknown protein	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.94	Contig3001_at	Contig3001	-	-	9e-12	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.74	89.1	0.94	Contig3350_at	Contig3350	-	-	5e-2	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.94	Contig3903_x_at	Contig3903	hypothetical protein LOC732694	-	3e+0	At1g65150	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.94	Contig9287_at	Contig9287	-	-	3e-3	At3g47890	ubiquitin thiolesterase/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.94	Contig3625_at	Contig3625	-	-	8e-32	At3g02630	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.94	Contig15730_at	Contig15730	-	-	5e+0	At1g11755	LEW1 (LEAF WILTING 1)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.94	Contig22402_at	Contig22402	potassium transporter HAK4	-	2e-8	At3g02050	KUP3 (K+ UPTAKE TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig22208_at	Contig22208	-	-	2e+0	At1g02330	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
29.3	99.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.6	99.4	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.1	99.1	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.8	98.9	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.5	97.6	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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