Co-expression analysis

Gene ID	Contig1403_at
Gene name
Homology with Arabidopsis	Similar to At3g26430: GDSL-motif lipase/hydrolase family protein (HF=1e-2)
Module size	6 genes
NF	0.64
%ile	86.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig1403_at	Contig1403	-	-	1e-2	At3g26430	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.91	Contig5555_at	Contig5555	-	-	1e-55	At1g80560	3-isopropylmalate dehydrogenase, chloroplast, putative	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.91	Contig5026_at	Contig5026	-	-	3e-4	At1g51400	photosystem II 5 kD protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.90	Contig2265_at	Contig2265	-	-	4e-3	At1g72970	HTH (HOTHEAD)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	HD05F01r_at	HD05F01r	-	-	2e+1	Atcg00540	-	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.89	Contig21078_at	Contig21078	-	-	6e-1	At1g77765	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.9	GSM398267	HS41-1_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.5	97.6	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM398268	HS41-1_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5	96.7	GSM398269	HS41-1_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4	96.6	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.3	96.4	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.2	96.3	GSM398276	Moroc9-75_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.1	96.2	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage