Co-expression analysis

Gene ID	Contig14012_at
Gene name
Homology with Arabidopsis	Similar to At4g23920: UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2) (HF=7e-1)
Module size	6 genes
NF	0.62
%ile	84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig14012_at	Contig14012	-	-	7e-1	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.96	HA26O09r_s_at	HA26O09r	-	-	6e+0	At3g52780	PAP20	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig2832_s_at	Contig2832	-	-	6e+0	At4g36530	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	HVSMEb0001F21r2_x_at	HVSMEb0001F21r2	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig272_s_at	Contig272	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.97	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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