Co-expression analysis

Gene ID	Contig13989_at
Gene name
Homology with Arabidopsis	Similar to At5g39660: CDF2 (CYCLING DOF FACTOR 2) (HF=3e-12)
Module size	7 genes
NF	0.32
%ile	43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.91	Contig13989_at	Contig13989	-	-	3e-12	At5g39660	CDF2 (CYCLING DOF FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig197_s_at	Contig197	-	-	1e-24	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.90	Contig17664_at	Contig17664	-	-	9e-5	At5g05010	clathrin adaptor complexes medium subunit-related	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.93	Contig21965_at	Contig21965	-	-	2e+0	At2g13720	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.93	Contig18714_at	Contig18714	-	-	2e+0	At1g67635	-	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.91	Contig20084_at	Contig20084	-	-	3e+0	At2g43930	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.91	Contig1636_at	Contig1636	-	-	5e-1	At5g06210	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.6	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.6	98.6	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.6	97.7	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM372972	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.6	95.3	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM372966	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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